| add(ReactionPathDiagram &d) (defined in ReactionPathDiagram) | ReactionPathDiagram | |
| add(shared_ptr< ReactionPathDiagram > d) | ReactionPathDiagram | |
| addNode(size_t k, const string &nm, double x=0.0) (defined in ReactionPathDiagram) | ReactionPathDiagram | |
| arrow_hue | ReactionPathDiagram | |
| arrow_width | ReactionPathDiagram | |
| bold_color | ReactionPathDiagram | |
| bold_min | ReactionPathDiagram | |
| build() | ReactionPathDiagram | |
| dashed_color | ReactionPathDiagram | |
| dashed_max | ReactionPathDiagram | |
| displayOnly(size_t k=npos) | ReactionPathDiagram | inline |
| dot_options | ReactionPathDiagram | |
| element | ReactionPathDiagram | |
| exclude(const string &aaname) (defined in ReactionPathDiagram) | ReactionPathDiagram | inline |
| exclude(vector< string > &names) (defined in ReactionPathDiagram) | ReactionPathDiagram | inline |
| excluded() (defined in ReactionPathDiagram) | ReactionPathDiagram | inline |
| exportToDot(std::ostream &s) | ReactionPathDiagram | |
| findMajorPaths(double threshold, size_t lda, double *a) | ReactionPathDiagram | |
| flow(size_t k1, size_t k2) | ReactionPathDiagram | inline |
| flow_type | ReactionPathDiagram | |
| flowType() const | ReactionPathDiagram | |
| getData() | ReactionPathDiagram | |
| getDot() | ReactionPathDiagram | |
| getLog() | ReactionPathDiagram | |
| hasNode(size_t k) | ReactionPathDiagram | inline |
| include(const string &aaname) (defined in ReactionPathDiagram) | ReactionPathDiagram | inline |
| include(vector< string > &names) (defined in ReactionPathDiagram) | ReactionPathDiagram | inline |
| included() (defined in ReactionPathDiagram) | ReactionPathDiagram | inline |
| label_min | ReactionPathDiagram | |
| linkNodes(size_t k1, size_t k2, size_t rxn, double value, string legend="") (defined in ReactionPathDiagram) | ReactionPathDiagram | |
| m_builder | ReactionPathDiagram | protected |
| m_exclude (defined in ReactionPathDiagram) | ReactionPathDiagram | protected |
| m_flxmax (defined in ReactionPathDiagram) | ReactionPathDiagram | protected |
| m_font | ReactionPathDiagram | |
| m_include (defined in ReactionPathDiagram) | ReactionPathDiagram | protected |
| m_isBuilt | ReactionPathDiagram | protected |
| m_kin | ReactionPathDiagram | protected |
| m_local (defined in ReactionPathDiagram) | ReactionPathDiagram | protected |
| m_log | ReactionPathDiagram | protected |
| m_nodes | ReactionPathDiagram | protected |
| m_pathlist (defined in ReactionPathDiagram) | ReactionPathDiagram | protected |
| m_paths (defined in ReactionPathDiagram) | ReactionPathDiagram | protected |
| m_rxns | ReactionPathDiagram | protected |
| m_speciesNumber (defined in ReactionPathDiagram) | ReactionPathDiagram | protected |
| maxFlow() | ReactionPathDiagram | inline |
| name | ReactionPathDiagram | |
| netFlow(size_t k1, size_t k2) | ReactionPathDiagram | inline |
| nNodes() (defined in ReactionPathDiagram) | ReactionPathDiagram | inline |
| node(size_t k) (defined in ReactionPathDiagram) | ReactionPathDiagram | inline |
| normal_color | ReactionPathDiagram | |
| nPaths() (defined in ReactionPathDiagram) | ReactionPathDiagram | inline |
| path(size_t k1, size_t k2) (defined in ReactionPathDiagram) | ReactionPathDiagram | inline |
| path(size_t n) (defined in ReactionPathDiagram) | ReactionPathDiagram | inline |
| ReactionPathDiagram()=default (defined in ReactionPathDiagram) | ReactionPathDiagram | |
| ReactionPathDiagram(shared_ptr< Kinetics > kin, const string &element_) | ReactionPathDiagram | |
| reactions() (defined in ReactionPathDiagram) | ReactionPathDiagram | |
| scale | ReactionPathDiagram | |
| setFlowType(const string &fType) | ReactionPathDiagram | |
| setFont(const string &font) | ReactionPathDiagram | inline |
| show_details | ReactionPathDiagram | |
| species() (defined in ReactionPathDiagram) | ReactionPathDiagram | |
| threshold | ReactionPathDiagram | |
| title | ReactionPathDiagram | |
| writeData(std::ostream &s) (defined in ReactionPathDiagram) | ReactionPathDiagram | |
| x_size | ReactionPathDiagram | |
| y_size | ReactionPathDiagram | |
| ~ReactionPathDiagram() | ReactionPathDiagram | virtual |
1.9.7