C2 Class Reference

Handles two species in a single reaction. More...

#include <StoichManager.h>

Public Member Functions
	C2 (size_t rxn=0, size_t ic0=0, size_t ic1=0)
void	incrementSpecies (const doublereal *R, doublereal *S) const
void	decrementSpecies (const doublereal *R, doublereal *S) const
void	multiply (const doublereal *S, doublereal *R) const
void	incrementReaction (const doublereal *S, doublereal *R) const
void	decrementReaction (const doublereal *S, doublereal *R) const
void	resizeCoeffs (const std::map< std::pair< size_t, size_t >, size_t > &indices)
void	derivatives (const double *S, const double *R, vector_fp &jac) const
void	scale (const double *R, double *out, double factor) const

Private Attributes
size_t	m_rxn
	Reaction index -> index into the ROP vector. More...
size_t	m_ic0
	Species index -> index into the species vector for the two species. More...
size_t	m_ic1
size_t	m_jc0
size_t	m_jc1
	Indices in derivative triplet vector. More...

Detailed Description

Handles two species in a single reaction.

See Stoichiometry

Definition at line 188 of file StoichManager.h.

Constructor & Destructor Documentation

C2()

C2 ( size_t  rxn = 0, size_t  ic0 = 0, size_t  ic1 = 0  )

inline

Definition at line 191 of file StoichManager.h.

Member Function Documentation

incrementSpecies()

void incrementSpecies ( const doublereal *  R, doublereal *  S  ) const

inline

Definition at line 194 of file StoichManager.h.

decrementSpecies()

void decrementSpecies ( const doublereal *  R, doublereal *  S  ) const

inline

Definition at line 199 of file StoichManager.h.

multiply()

void multiply ( const doublereal *  S, doublereal *  R  ) const

inline

Definition at line 204 of file StoichManager.h.

incrementReaction()

void incrementReaction ( const doublereal *  S, doublereal *  R  ) const

inline

Definition at line 212 of file StoichManager.h.

decrementReaction()

void decrementReaction ( const doublereal *  S, doublereal *  R  ) const

inline

Definition at line 216 of file StoichManager.h.

resizeCoeffs()

void resizeCoeffs ( const std::map< std::pair< size_t, size_t >, size_t > &  indices )

inline

Definition at line 220 of file StoichManager.h.

derivatives()

void derivatives ( const double *  S, const double *  R, vector_fp &  jac  ) const

inline

Definition at line 226 of file StoichManager.h.

scale()

void scale ( const double *  R, double *  out, double  factor  ) const

inline

Definition at line 236 of file StoichManager.h.

Member Data Documentation

m_rxn

size_t m_rxn

private

Reaction index -> index into the ROP vector.

Definition at line 243 of file StoichManager.h.

m_ic0

size_t m_ic0

private

Species index -> index into the species vector for the two species.

Definition at line 246 of file StoichManager.h.

m_ic1

size_t m_ic1

private

Definition at line 246 of file StoichManager.h.

m_jc0

size_t m_jc0

private

Definition at line 248 of file StoichManager.h.

m_jc1

size_t m_jc1

private

Indices in derivative triplet vector.

Definition at line 248 of file StoichManager.h.

---

The documentation for this class was generated from the following file:

• StoichManager.h